Journal: Oncotarget

Article Title: Host cell transcriptome modification upon exogenous HPV16 L2 protein expression

doi: 10.18632/oncotarget.21817

Figure Lengend Snippet: Enrichment plots for four selected gene sets are shown as above. Gene sets are selected based on their biological functions, GSEA p -values, and FDR q-values ( p < 0.05, and FDR<0.1). Green line indicates accumulative enrichment score; black lines show ranking location of genes with gene set; gray color visualizes ranking metric scores; red and blue gradient colors suggest a positive or a negative regulation, respectively; and hits on the left side of orange dash lines are considered within leading edge subset (labeled LEA).

Article Snippet: GSEA v2.0.6 was used for this analysis (Broad Institute, Cambridge, MA, USA) [ , ].

Techniques: Labeling

Journal: Oncotarget

Article Title: Host cell transcriptome modification upon exogenous HPV16 L2 protein expression

doi: 10.18632/oncotarget.21817

Figure Lengend Snippet: A. Table of detailed GSEA results of enriched gene set “Positive Regulation of Cell Proliferation”. ES: Enrichment Score. B. Heatmap of clustered genes in the leading edge subsets of gene sets related to apoptosis and programmed cell death. Red and blue colors indicate positively and negatively regulated transcripts, respectively, upon HPV16 L2 protein expression. Darker the color, greater the fold difference. Rows are genes in leading edge subsets; columns are gene sets, which are labeled as 1 to 3. C. Table of explanations for Arabic numbers used in B.

Article Snippet: GSEA v2.0.6 was used for this analysis (Broad Institute, Cambridge, MA, USA) [ , ].

Techniques: Expressing, Labeling